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To explore the broader category, visit our full Tax Preparation & Compliance Software guide. Other Software products for Nonprofits.

Other Software products for Nonprofits.

Tax Preparation Software for Nonprofits and Associations
Albert Richer

Navigating the Landscape of Tax Preparation Software for Nonprofits: What Data Tells Us When analyzing customer feedback across multiple platforms, it becomes clear that nonprofits have unique needs when it comes to tax preparation software. Comparative research shows that software like QuickBooks Online and TaxSlayer frequently appear in top-rated lists for their user-friendly interfaces and robust reporting features. Many reviews indicate that users appreciate QuickBooks for its seamless integration with other accounting tools, which is crucial for organizations juggling multiple financial responsibilities. However, while some users overthink the necessity of advanced features, data suggests that prioritizing basic functionalities—such as accurate filing and easy access to previous records—often meets the needs of many small nonprofits. Interestingly, H&R Block receives positive feedback in customer reviews for its affordability and comprehensive support, making it an appealing choice for organizations on a tight budget. Industry reports show that a significant portion of nonprofits prioritize cost-effective solutions, yet often overlook essential customer service elements, which can lead to frustration during peak tax season. Navigating the Landscape of Tax Preparation Software for Nonprofits: What Data Tells Us When analyzing customer feedback across multiple platforms, it becomes clear that nonprofits have unique needs when it comes to tax preparation software.

Similar Categories
1
Expert Score
9.8 / 10
427
128

990 Tracker

990 Tracker
View Website
990 Tracker is a tax-exempt software designed specifically to streamline data collection, form preparation, and e-filing for nonprofits and accounting firms. This SaaS solution automates compliance, making it a valuable tool for industry professionals who need to manage tax-exempt filings effectively and efficiently.
990 Tracker is a tax-exempt software designed specifically to streamline data collection, form preparation, and e-filing for nonprofits and accounting firms. This SaaS solution automates compliance, making it a valuable tool for industry professionals who need to manage tax-exempt filings effectively and efficiently.

Best for teams that are

  • Large exempt organizations like universities, hospitals, and pension trusts
  • Entities with high volumes of K-1s and complex investment portfolios
  • Organizations needing to manage master compensation across multiple entities

Skip if

  • Small nonprofits with simple 990-N or 990-EZ filing needs
  • Organizations with limited budgets seeking a low-cost solution
  • Single-entity nonprofits with no investment complexity

Expert Take

Our analysis shows 990 Tracker excels for complex non-profits due to its specialized Master Compensation Module and deep integration with K1 Aggregator, which automates the ingestion of alternative investment data. Research indicates it is a preferred choice for major universities and health systems, backed by its pedigree as the former C-TRAC system from Crowe. While it lacks support for the simple 990-N, its capability to handle intricate multi-state and multi-entity filings makes it a robust enterprise solution.

Pros

  • IRS-approved e-filing for 42 state jurisdictions
  • Master Compensation Module for multi-entity reporting
  • One-click integration with K1 Aggregator
  • SOC 2 Type 2 certified security
  • Trusted by 44 of top 100 institutional investors

Cons

  • Does not support Form 990-N filing
  • Manual upload required for some 990-T attachments
  • Pricing is not publicly available
  • High cost reported by some users
  • Issues with state returns subject to siloing
2
Expert Score
9.8 / 10
741
64
USER-FRIENDLY INTERFACE
AUTOMATED CALCULATIONS

Wolters Kluwer Nonprofit Tax Software

Wolters Kluwer Nonprofit Tax Software
View Website
Wolters Kluwer provides a comprehensive tax and accounting software solution specifically designed for nonprofit organizations. It automates calculations, form generation, and routine tasks, ensuring compliance and up-to-date regulatory adherence, crucial for the unique tax and accounting needs of nonprofit entities.
Wolters Kluwer provides a comprehensive tax and accounting software solution specifically designed for nonprofit organizations. It automates calculations, form generation, and routine tasks, ensuring compliance and up-to-date regulatory adherence, crucial for the unique tax and accounting needs of nonprofit entities.
USER-FRIENDLY INTERFACE
AUTOMATED CALCULATIONS

Best for teams that are

  • Large CPA firms and professional tax preparers handling high-volume compliance
  • Organizations with complex multi-state filing requirements
  • Firms needing integrated workflow, document management, and K-1 automation

Skip if

  • Small nonprofits looking for a low-cost, DIY filing solution
  • Non-accountants or volunteers unfamiliar with professional tax interfaces
  • Organizations with simple 990-N filing needs

Expert Take

Our analysis shows that Wolters Kluwer's CCH Axcess Tax stands out for its sheer depth of compliance capability, handling complex nonprofit forms like 990-T and 990-PF that lighter tools often miss. Research indicates it is a top choice for firms requiring rigorous security (SOC 2/ISO 27001) and cloud mobility. However, potential users must weigh these premium features against documented reports of performance lag during peak seasons.

Pros

  • Comprehensive 990/990-PF/990-T form support
  • Cloud-based SaaS allows remote access
  • Strong SOC 2 & ISO 27001 security
  • Integrates with Xero and CCH suite
  • Automated depreciation data flow to forms

Cons

  • Reported system slowness and lag
  • Slow customer support response times
  • Steep learning curve for new users
  • Complex, opaque pricing for larger firms
  • Annual price increases reported by users
3
Expert Score
9.7 / 10
656
107
NONPROFIT FOCUSED
COST-EFFECTIVE

TaxAct IRS Form 990 E-File

TaxAct IRS Form 990 E-File
View Website
TaxAct's IRS Form 990 E-File solution is an industry-specific tax preparation software specifically designed for tax-exempt organizations. It efficiently addresses the unique needs of nonprofits and associations by providing easy guidance for 990 returns, simple reporting, free e-filing, and automatic data entry.
TaxAct's IRS Form 990 E-File solution is an industry-specific tax preparation software specifically designed for tax-exempt organizations. It efficiently addresses the unique needs of nonprofits and associations by providing easy guidance for 990 returns, simple reporting, free e-filing, and automatic data entry.
NONPROFIT FOCUSED
COST-EFFECTIVE

Best for teams that are

  • Small to medium nonprofits comfortable with DIY tax preparation
  • Private foundations needing to file Form 990-PF
  • Organizations in California or Texas needing integrated state return filing

Skip if

  • Large organizations with complex multi-state filings outside CA or TX
  • Mac users preferring desktop software (some versions are Windows-only)
  • Tax professionals filing more than 5 returns without a preparer license

Expert Take

Our analysis shows TaxAct is one of the few major providers offering a dedicated online DIY solution for Federal Form 990 filing, covering a wide range of forms including 990-PF for private foundations. Research indicates it effectively bridges the gap between expensive professional CPA services and manual paper filing through its guided Q&A interface. While state support is limited, the federal capabilities and accuracy guarantees make it a strong choice for smaller non-profits.

Pros

  • Supports Forms 990, 990-EZ, 990-PF, 990-N
  • IRS Authorized E-file Provider
  • Plain-English Q&A interview format
  • $100k Accuracy Guarantee included
  • Cloud-based access for multiple users

Cons

  • State e-file limited to CA and TX
  • No live CPA review (Xpert Assist)
  • Price increased significantly since launch
  • State filings cost extra
  • Limited to one return per account
4
Expert Score
9.6 / 10
423
114
REGULATORY UPDATES

Aplos Nonprofit Accounting Software

Aplos Nonprofit Accounting Software
View Website
Aplos is a robust SaaS solution specifically designed for nonprofits and churches, providing true fund accounting capabilities. It addresses industry-specific needs by tracking funds and grants, generating donor-ready reports, and ensuring regulatory compliance.
Aplos is a robust SaaS solution specifically designed for nonprofits and churches, providing true fund accounting capabilities. It addresses industry-specific needs by tracking funds and grants, generating donor-ready reports, and ensuring regulatory compliance.
REGULATORY UPDATES

Best for teams that are

  • Nonprofits wanting an all-in-one fund accounting and 990-N/EZ filing solution
  • Faith-based organizations and churches needing donor management
  • Small to mid-sized nonprofits needing true fund accounting

Skip if

  • Large organizations required to file the full Form 990 (Long Form)
  • Nonprofits looking for a standalone tax filer without accounting features
  • Very small organizations with zero budget for monthly software subscriptions

Expert Take

Our analysis shows Aplos effectively bridges the gap between complex accounting standards and volunteer-led operations. Research indicates it is one of the few platforms offering 'true fund accounting'—essential for tracking restricted grants—integrated directly with donor management. Based on documented features, this unification eliminates the need for separate CRM and accounting tools, ensuring compliance without the steep learning curve of enterprise software.

Pros

  • True fund accounting for restricted funds
  • Built-in donor management and CRM
  • Intuitive interface for non-accountants
  • Automatic donation tracking and receipts
  • SOC 2 and PCI compliant security

Cons

  • Higher starting price than some peers
  • Fewer integrations than QuickBooks
  • Advanced features require plan upgrades
  • Reporting can be complex for some
  • Extra fees for certain add-ons
5
Expert Score
9.4 / 10
664
91
IRS COMPLIANT

ExpressTaxExempt

ExpressTaxExempt
View Website
ExpressTaxExempt is a dedicated solution for non-profit organizations and associations seeking a streamlined way to e-file Form 990 and other IRS forms. It not only simplifies complex tax preparation processes but also ensures compliance with IRS regulations, meeting the specific needs of this industry.
ExpressTaxExempt is a dedicated solution for non-profit organizations and associations seeking a streamlined way to e-file Form 990 and other IRS forms. It not only simplifies complex tax preparation processes but also ensures compliance with IRS regulations, meeting the specific needs of this industry.
IRS COMPLIANT

Best for teams that are

  • CPAs and Tax Professionals managing filings for multiple clients
  • Nonprofits needing to file complex forms like 990-PF or 990-T
  • Organizations requiring multi-user access and board approval workflows

Skip if

  • Users wanting a free filing option
  • Organizations seeking a full fund accounting system
  • Small nonprofits with extremely simple returns not needing review workflows

Expert Take

Our analysis shows that ExpressTaxExempt simplifies the often daunting 990 filing process by automatically generating required schedules based on user input, a feature that significantly reduces manual errors. Research indicates the platform's SOC 2 Type 2 certification provides a level of data security that is essential for handling sensitive nonprofit financial records. Furthermore, the pay-per-return pricing model offers a transparent, flexible alternative for organizations that prefer to avoid recurring subscriptions.

Pros

  • Supports full 990 series (N, EZ, PF, T)
  • Auto-generates required schedules for free
  • SOC 2 Type 2 certified security
  • Pay-per-return pricing (no subscription)
  • US-based phone, chat, and email support

Cons

  • No state tax filing (except California)
  • Cannot import data from external software
  • Session timeouts may cause data loss
  • Per-return cost higher for complex forms
6
Expert Score
9.3 / 10
402
151
EXCELLENT SUPPORT
DEDICATED NONPROFIT FEATURES

TaxBandits Form 990 Series

TaxBandits Form 990 Series
View Website
TaxBandits offers an intuitive platform, specifically designed for nonprofits and associations to prepare and file 990 tax returns online. It supports all 990 schedules, thus streamlining the tax filing process for these organizations. The software simplifies the intricate tax preparation, making it a perfect solution for the unique needs of the nonprofit sector.
TaxBandits offers an intuitive platform, specifically designed for nonprofits and associations to prepare and file 990 tax returns online. It supports all 990 schedules, thus streamlining the tax filing process for these organizations. The software simplifies the intricate tax preparation, making it a perfect solution for the unique needs of the nonprofit sector.
EXCELLENT SUPPORT
DEDICATED NONPROFIT FEATURES

Best for teams that are

  • Tax professionals and nonprofits needing to manage reviewers and approvers
  • Organizations needing to file a wide range of forms including 990-T and 1120-POL
  • Filers wanting bulk upload capabilities for contributions and grants

Skip if

  • Users wanting a dedicated accounting software suite
  • Those looking for a completely free filing solution
  • Filers who prefer desktop-based software over cloud-based platforms

Expert Take

Our analysis shows TaxBandits stands out for its robust security framework, boasting both SOC 2 and HIPAA compliance, which is critical for nonprofits handling sensitive donor data. Research indicates the 'Interview-style' filing option significantly lowers the barrier to entry for smaller organizations lacking dedicated tax professionals. Based on documented features, the seamless integration with major accounting platforms like QuickBooks and Xero streamlines the data entry process, reducing the risk of manual errors.

Pros

  • Supports full 990 series (990, EZ, PF, N, T)
  • Interview-style filing simplifies complex forms
  • Internal audit check prevents IRS rejections
  • SOC 2 and HIPAA certified security
  • Integrates with QuickBooks, Xero, and Sage

Cons

  • Interface can be slow during peak times
  • No refunds for 990-N (free elsewhere)
  • Support response times lag in busy season
  • State charitable registration support is limited
7
Expert Score
9.3 / 10
520
60
EASY E-FILING
FREE PLAN AVAILABLE

Tax 990 E-filing Software

Tax 990 E-filing Software
View Website
Tax 990 is a SaaS solution specially designed for nonprofits and associations to simplify their tax filings. The software provides a user-friendly platform that guides users through Form 990 series E-filing, ensuring IRS compliance and significantly reducing the time and effort required for tax preparation.
Tax 990 is a SaaS solution specially designed for nonprofits and associations to simplify their tax filings. The software provides a user-friendly platform that guides users through Form 990 series E-filing, ensuring IRS compliance and significantly reducing the time and effort required for tax preparation.
EASY E-FILING
FREE PLAN AVAILABLE

Best for teams that are

  • Small to mid-sized nonprofits seeking a simple, interview-style filing process
  • Tax professionals and CPAs managing filings for multiple nonprofit clients
  • Organizations needing to file 990-N, 990-EZ, or 990-PF with volume-based pricing

Skip if

  • Large enterprises requiring complex ERP integration for tax data
  • Organizations looking for a free filing solution for complex forms
  • Nonprofits seeking a full-suite fund accounting system

Expert Take

Our analysis shows that Tax 990 distinguishes itself with a robust 'Reviewers and Approvers' workflow, directly addressing the IRS requirement for board review of tax forms—a feature often missing in budget software. Research indicates it is one of the few providers in its niche with SOC 2 certification, offering a higher tier of data security for sensitive donor information. While it carries a higher price point for the full Form 990, the inclusion of auto-generated schedules and free extension filings provides significant value for compliance-focused nonprofits.

Pros

  • SOC 2 Certified Security
  • Supports Full 990 Series
  • Board Approval Workflow
  • No Hidden Fees
  • Free Retransmission

Cons

  • Limited State E-filing
  • No Weekend Support
  • Higher Cost for Full 990
  • Per-Return Pricing Model
  • Separate State Filing Fees
8
Expert Score
8.8 / 10
583
65
COMPREHENSIVE REPORTING

QuickBooks Nonprofit Accounting

QuickBooks Nonprofit Accounting
View Website
QuickBooks Nonprofit Accounting Software is specifically designed to simplify the complexities of nonprofit fund accounting. It provides effortless management of donations, grants, and finances, catering to the unique needs of nonprofits and associations while ensuring compliance.
QuickBooks Nonprofit Accounting Software is specifically designed to simplify the complexities of nonprofit fund accounting. It provides effortless management of donations, grants, and finances, catering to the unique needs of nonprofits and associations while ensuring compliance.
COMPREHENSIVE REPORTING

Best for teams that are

  • Nonprofits needing robust general accounting and expense tracking
  • Organizations wanting to tag expenditures by fund or program for reporting
  • Users already utilizing QuickBooks for business operations

Skip if

  • Nonprofits looking for a tool to directly e-file the 990 form without add-ons
  • Organizations requiring strict fund accounting without manual workarounds
  • Users wanting a free or low-cost simple filing solution

Expert Take

Our analysis shows QuickBooks Online is the de facto standard for small-to-mid-sized nonprofits, largely due to the TechSoup partnership which reduces costs from over $1,000/year to under $170/year. While research indicates it lacks the 'true' fund accounting capabilities found in enterprise ERPs, the 'Class' and 'Location' tracking features successfully bridge this gap for most organizations. Its ecosystem of 750+ integrations allows seamless connection to specialized donor management platforms, making it a versatile hub for nonprofit finance.

Pros

  • Unbeatable TechSoup pricing ($75-$170/year)
  • Massive ecosystem of 750+ integrations
  • Cloud access for remote teams
  • User-friendly for non-accountant volunteers
  • Widely accepted by CPAs and auditors

Cons

  • Lacks true fund accounting features
  • Native donor tracking is very basic
  • Reporting limited to two dimensions
  • Retail pricing is expensive without discount
  • Customer support can be difficult
9
Expert Score
8.8 / 10
356
144
SECURE DATA STORAGE

File990 Nonprofit Tax E-file

File990 Nonprofit Tax E-file
View Website
File990.org offers a reliable and efficient solution for nonprofits and associations to e-file their IRS 990-N & 990-EZ forms. The platform is specifically designed to cater to the unique needs of this industry, ensuring safe, quick, and hassle-free tax preparation and compliance.
File990.org offers a reliable and efficient solution for nonprofits and associations to e-file their IRS 990-N & 990-EZ forms. The platform is specifically designed to cater to the unique needs of this industry, ensuring safe, quick, and hassle-free tax preparation and compliance.
SECURE DATA STORAGE

Best for teams that are

  • Parent organizations managing tax compliance for multiple chapters or components
  • Nonprofits filing Form 990-N or 990-EZ wanting automated reminders
  • Users needing to track the filing status of subunits to prevent revocation

Skip if

  • Single entities that do not need multi-chapter tracking features
  • Users wanting integrated bookkeeping and accounting tools
  • Organizations seeking complex legal or tax advice included with software

Expert Take

Our analysis shows File990 distinguishes itself with a specialized Enterprise platform designed for parent organizations managing multiple chapters, a feature often missing in generic tax software. Research indicates it streamlines compliance by tracking component filing statuses and automating reminders. While it lacks support for the full Form 990, its focus on automating the 990-N and 990-EZ process makes it a robust choice for small to mid-sized networks.

Pros

  • Specialized enterprise dashboard for multi-chapter management
  • Automated data import via EIN
  • IRS-authorized with bank-level security
  • Automated reminders to prevent lost status
  • Competitive pricing for Form 990-EZ

Cons

  • No support for full Form 990
  • No support for Form 990-PF
  • Higher price for 990-N than competitors
  • No professional tax advice included

Product Comparison

Product Has Mobile App Has Free Plan Has Free Trial Integrates With Zapier Has Public API Live Chat Support SOC 2 or ISO Certified Popular Integrations Supports SSO Starting Price
1 990 Tracker
Web-only No Free demo available No No No Not specified Limited integrations No Pricing upon request
2 Wolters Kluwer Nonprofit Tax Software
Web-only No Contact for trial No Enterprise API only Email/Ticket only Not specified Custom integrations only Enterprise plans only Contact for pricing
3 TaxAct IRS Form 990 E-File
Web-only Yes Not specified No No No Not specified Limited integrations No Custom pricing
4 Aplos Nonprofit Accounting Software
Web-only No Yes - 30 days No No Email/Ticket only Not specified Limited integrations No $59/month
5 ExpressTaxExempt
Web-only Yes Not specified No No No Not specified Limited integrations No $49.90/year
6 TaxBandits Form 990 Series
Web-only No Not specified No No Yes Not specified Limited integrations No $4.95/Form
7 Tax 990 E-filing Software
Web-only Yes Not specified No No Yes Not specified Limited integrations No $49.99 per return
8 QuickBooks Nonprofit Accounting
Yes No Yes - 30 days Yes Yes Yes SOC 2 Salesforce, Google Workspace, Microsoft 365 Yes $25/month
9 File990 Nonprofit Tax E-file
Web-only No Not specified No No No Not specified Limited integrations No $39.99 per filing
1

990 Tracker

Has Mobile App
Web-only
Has Free Plan
No
Has Free Trial
Free demo available
Integrates With Zapier
No
Has Public API
No
Live Chat Support
No
SOC 2 or ISO Certified
Not specified
Popular Integrations
Limited integrations
Supports SSO
No
Starting Price
Pricing upon request
2

Wolters Kluwer Nonprofit Tax Software

Has Mobile App
Web-only
Has Free Plan
No
Has Free Trial
Contact for trial
Integrates With Zapier
No
Has Public API
Enterprise API only
Live Chat Support
Email/Ticket only
SOC 2 or ISO Certified
Not specified
Popular Integrations
Custom integrations only
Supports SSO
Enterprise plans only
Starting Price
Contact for pricing
3

TaxAct IRS Form 990 E-File

Has Mobile App
Web-only
Has Free Plan
Yes
Has Free Trial
Not specified
Integrates With Zapier
No
Has Public API
No
Live Chat Support
No
SOC 2 or ISO Certified
Not specified
Popular Integrations
Limited integrations
Supports SSO
No
Starting Price
Custom pricing
4

Aplos Nonprofit Accounting Software

Has Mobile App
Web-only
Has Free Plan
No
Has Free Trial
Yes - 30 days
Integrates With Zapier
No
Has Public API
No
Live Chat Support
Email/Ticket only
SOC 2 or ISO Certified
Not specified
Popular Integrations
Limited integrations
Supports SSO
No
Starting Price
$59/month
5

ExpressTaxExempt

Has Mobile App
Web-only
Has Free Plan
Yes
Has Free Trial
Not specified
Integrates With Zapier
No
Has Public API
No
Live Chat Support
No
SOC 2 or ISO Certified
Not specified
Popular Integrations
Limited integrations
Supports SSO
No
Starting Price
$49.90/year
6

TaxBandits Form 990 Series

Has Mobile App
Web-only
Has Free Plan
No
Has Free Trial
Not specified
Integrates With Zapier
No
Has Public API
No
Live Chat Support
Yes
SOC 2 or ISO Certified
Not specified
Popular Integrations
Limited integrations
Supports SSO
No
Starting Price
$4.95/Form
7

Tax 990 E-filing Software

Has Mobile App
Web-only
Has Free Plan
Yes
Has Free Trial
Not specified
Integrates With Zapier
No
Has Public API
No
Live Chat Support
Yes
SOC 2 or ISO Certified
Not specified
Popular Integrations
Limited integrations
Supports SSO
No
Starting Price
$49.99 per return
8

QuickBooks Nonprofit Accounting

Has Mobile App
Yes
Has Free Plan
No
Has Free Trial
Yes - 30 days
Integrates With Zapier
Yes
Has Public API
Yes
Live Chat Support
Yes
SOC 2 or ISO Certified
SOC 2
Popular Integrations
Salesforce, Google Workspace, Microsoft 365
Supports SSO
Yes
Starting Price
$25/month
9

File990 Nonprofit Tax E-file

Has Mobile App
Web-only
Has Free Plan
No
Has Free Trial
Not specified
Integrates With Zapier
No
Has Public API
No
Live Chat Support
No
SOC 2 or ISO Certified
Not specified
Popular Integrations
Limited integrations
Supports SSO
No
Starting Price
$39.99 per filing

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How We Rank Products

Our Evaluation Process

In evaluating tax preparation software for nonprofits and associations, key factors included software specifications, features tailored for nonprofit needs, customer reviews, and overall ratings. Important considerations for this category involved the software's compliance with IRS regulations, ease of use, cost-effectiveness, and additional features like donor management and financial reporting capabilities. The rankings were determined through comprehensive analysis of product specifications, aggregated customer feedback, and a thorough review of ratings, alongside an evaluation of the price-to-value ratio for each software solution. This research methodology ensures an objective comparison that highlights the most suitable tax preparation options for nonprofit organizations.

Overall scores reflect relative ranking within this category, accounting for which limitations materially affect real-world use cases. Small differences in category scores can result in larger ranking separation when those differences affect the most common or highest-impact workflows.

Verification

  • Products evaluated through comprehensive research and analysis of features specific to nonprofit tax preparation needs.
  • Rankings based on thorough analysis of user reviews and expert ratings in the nonprofit sector.
  • Selection criteria focus on compliance with nonprofit tax regulations and user-friendliness for associations.

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Score Breakdown

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What This Award Means